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Methods in Biodiversity Analysis

Vak 2013-2014

Admission requirements

BSc-course Biodiversity, theory and practice of systematics or equivalent.

Contact information

Coordinator: Dr. M.C.Roos
Email: roos@nhn.leidenuniv.nl

Description

The main aim of this course is to introduce a number of approaches and methods that are currently used in both actual and historical analyses of biodiversity and evolution. The following topics will be introduced and practiced:

  • Phylogenetic analysis: concepts and applications.
  • Analysis of geographic structure and gene flow in and between populations.
  • Analysis of historic and stratigraphic patterns, paleobiogeography and –ecology.
  • Spatial pattern analyses and historical biogeography: integrative approaches to map and analyze present distributions, reconstruct past distributions, and model possible future distributions; this includes advanced Island Biogeography in relation to conservation aspects.

Learning goals

Course objectives:
To provide a theoretical basis and some practical experience for the a successful MSc internship at Naturalis: good understanding of concepts of time and space; of collection data, data basing and data mining; of the practice of phylogeny reconstruction; of biogeographic methods and practice; of the integration of paleontological and actual data.

Final qualifications:
Theoretical understanding and hands on experience with current methods for phylogeny reconstruction, GIS, species distribution modeling, diversity analysis in both actual and stratigraphic contexts, phylogeographical analysis, dating techniques, etc.

Timetable

25 November 2013 – 20 December 2013
Details will be provided in due time on Blackboard; general outline is 1 week phylogeny, 1 week biogeography, 1 week speciation and population level-analysis, 1 week geological time, all with focus on current methods and concepts.

Total number of contact hours

100 clock hours, based on full attendance during the entire course (6 hrs/day)

Mode of instruction

Lectures, exercises, literature study, demonstrations.

Assessment method

Written reports, oral presentation, and examination.

Blackboard

All information of lectures and papers will be available on Blackboard.

Reading list

Relevant literature will be made available on Blackboard.

Registration

via USIS and enroll in Blackboard

Exchange and Study Abroad students, please see the Prospective students website for more information on how to apply.